Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs7636844 chr3:45927211 C/T 1.71E-5 493 32.98 27.42 8.77 KM Plot
PRAD rs76389436 chr4:187812752 A/G 2.06E-6 483 31.13 28.57 26.8 KM Plot
PRAD rs76403911 chr7:157942092 T/G 0 481 31.27 30.8 12.87 KM Plot
PRAD rs76411907 chr12:10737959 C/A 6.01E-5 485 30.8 32.63 19.93 KM Plot
PRAD rs76423273 chr5:154233214 C/T 0 493 30.08 36.05 4.87 KM Plot
PRAD rs76466448 chr2:107455805 A/G 0.000133 491 30.73 31.07 32.63 KM Plot
PRAD rs7648520 chr3:112501790 T/C 2.15E-7 494 30.78 33.72 17.77 KM Plot
PRAD rs76496098 chr15:83229141 T/C 4.33E-8 479 30.8 32.08 29.08 KM Plot
PRAD rs76502131 chr1:1157959 C/T 3.49E-9 490 31.27 30.73 13.73 KM Plot
PRAD rs76509445 chr5:154312389 T/C 0 493 30.23 32.85 4.87 KM Plot
PRAD rs76514175 chr6:43347125 A/G 5.6E-10 483 31.25 28.98 44.3 KM Plot
PRAD rs76514855 chr4:187812479 C/T 2.19E-6 481 31.13 28.57 26.8 KM Plot
PRAD rs76520356 chr11:129955573 C/T 1.96E-6 494 30.87 32.22 22.8 KM Plot
PRAD rs76525433 chr2:47155382 T/G 6.41E-6 492 30.8 32.4 36.85 KM Plot
PRAD rs76550775 chr20:61675116 G/A 7.16E-6 489 31.07 31.37 24.15 KM Plot